Schizophrenia versus Healthy Controls Classification based on fMRI 4D Spatiotemporal Data

Abstract

A wide array of machine learning approaches have been employed for differentiating patients with mental health disorders from healthy controls using neuroimaging data. However, almost all such methods have been applied on inputs based on connectivity matrices or features derived from the neuroimaging data. Only a few papers recently have considered such classification based on the original voxel-based spatiotemporal data. In this paper, we report the performance of a few cutting edge machine learning algorithms on voxel-based fMRI data to classify healthy controls and patients with schizophrenia. The methods that we employed included convolutional neural networks, convolutional recurrent neural networks with long short-term memory and a transfer learning approach for classification based on Wasserstein generative adversarial networks. In order to reduce the computational burden to fit in with available hardware, we had to reduce the original 4-dimensional data to 3-dimensional inputs for almost all architectures. Our results indicate that the relatively simpler architecture based on convolutional neural networks showed reasonable unambiguity in grouping patients from healthy controls. In contrast, the performance of the other two more complex architectures that we employed were comparatively poorer.

Competing Interest Statement

The authors have declared no competing interest.

Funding Statement

No external funding

Author Declarations

I confirm all relevant ethical guidelines have been followed, and any necessary IRB and/or ethics committee approvals have been obtained.

Yes

The details of the IRB/oversight body that provided approval or exemption for the research described are given below:

The data we used in the paper was publicly available de-identified individual-level data.

I confirm that all necessary patient/participant consent has been obtained and the appropriate institutional forms have been archived, and that any patient/participant/sample identifiers included were not known to anyone (e.g., hospital staff, patients or participants themselves) outside the research group so cannot be used to identify individuals.

Yes

I understand that all clinical trials and any other prospective interventional studies must be registered with an ICMJE-approved registry, such as ClinicalTrials.gov. I confirm that any such study reported in the manuscript has been registered and the trial registration ID is provided (note: if posting a prospective study registered retrospectively, please provide a statement in the trial ID field explaining why the study was not registered in advance).

Yes

I have followed all appropriate research reporting guidelines, such as any relevant EQUATOR Network research reporting checklist(s) and other pertinent material, if applicable.

Yes

Data Availability

All data produced in the present study are available upon reasonable request to the authors

Comments (0)

No login
gif