The first complete mitogenome of the endangered spotted eagle ray, , confirms species and family taxonomic status

Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573–580

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bustamante C, Barría C, Vargas-Caro C, Ovenden JR, Bennett MB (2016) The phylogenetic position of the giant devil ray Mobula mobular (Bonnaterre, 1788) (Myliobatiformes, Myliobatidae) inferred from the mitochondrial genome. Mitochondr DNA Part A 27(5):3540–3541

Article  CAS  Google Scholar 

Chan PP, Lowe TM (2019) tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods Mol Biol 1962:1–14

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen X, Ai W, Xiang D, Shi X (2016a) Mitochondrial genome of the longtail butterfly ray Gymnura poecilura (Myliobatiformes: Gymnuridae). Mitochondrial DNA Part A 27(1):696–697

Article  CAS  Google Scholar 

Chen X, Wiley T, Kyne PM, Feutry P (2016b) Complete mitochondrial genome of the Critically Endangered smalltooth sawfish Pristis pectinata (Rajiformes: Pristidae). Mitochondr DNA Part A 27(5):3331–3332

Article  CAS  Google Scholar 

Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and high-performance computing. Nat Methods 9(8):772

Article  CAS  PubMed  PubMed Central  Google Scholar 

Díaz-Jaimes P, Bayona-Vásquez NJ, Adams DH, Uribe-Alcocer M (2016) Complete mitochondrial DNA genome of bonnethead shark, Sphyrna tiburo, and phylogenetic relationships among main superorders of modern elasmobranchs. Meta Gene 7:48–55

Article  PubMed  Google Scholar 

Dulvy NK, Carlson J, Charvet P, Ajemian MJ, Bassos-Hull K, Blanco-Parra MP, Chartrain E, Derrick D, Dia M, Diop M, Doherty P, Dossa J, De Bruyne G, Herman K, Leurs GHL, Mejía-Falla PA, Navia AF, Pacoureau N, Pérez Jiménez JC, Pires JD, Seidu I, Soares A-L, Tamo A, VanderWright WJ, Williams AB (2021) Aetobatus narinari (amended version of 2021 assessment). IUCN Red List Threatened Species 2021:eT42564343A201613657

Google Scholar 

Finucci B, Rigby CL, Armstrong AO, Rezaie-Atagholipour M (2024) Aetobatus ocellatus. The IUCN Red List of Threatened Species 2024: e.T42566169A124549514. https://doi.org/10.2305/IUCN.UK.2024-1.RLTS.T42566169A124549514.en. Accessed on 09 January 2025.

Froese R, Pauly D, Editors (2025) FishBase. Aetobatus Blainville, 1816. Accessed through: World Register of Marine Species at: https://www.marinespecies.org/aphia.php?p=taxdetails&id=205558 on 2025-02-03

Glaus K, Appleyard SA (2024) Genetic diversity, kinship, and polychromatism in the spotted eagle ray Aetobatus ocellatus of Fiji. Diversity 16(9):588

Article  CAS  Google Scholar 

Gouy M, Tannier E, Comte N, Parsons DP (2021) Seaview version 5: a multiplatform software for multiple sequence alignment, molecular phylogenetic analyses, and tree reconciliation. In: Katoh K (ed) Multiple sequence alignment. Springer, Cham, pp 241–260

Chapter  Google Scholar 

Greiner S, Lehwark P, Bock R (2019) OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res 47:W59–W64

Article  CAS  PubMed  PubMed Central  Google Scholar 

Humble E, Boggio-Pasqua A, Kamla AT, Bassos‐Hull K, Bergacker S, Gose MA, di Notarbartolo Sciara G (2025) Genetic and morphometric support for the Atlantic Pygmy Devil Ray, <Emphasis Type="Italic">Mobula hypostoma</Emphasis>(Bancroft, 1831), in the Eastern Atlantic Ocean. Aquat Conserv Mar Freshw Ecosyst 35(1):e70030

Article  Google Scholar 

Inkscape Project (2020) Inkscape: Open Source Scalable Vector Graphics Editor. Available at https://inkscape.org/

IUCN (2025) The IUCN Red List of Threatened Species. Version 2025-2. https://www.iucnredlist.org/es/search?query=aetobatus&searchType=species. Accessed on 12 November 2025.

Kousteni V, Mazzoleni S, Vasileiadou K, Rovatsos M (2021) Complete mitochondrial DNA genome of nine species of sharks and rays and their phylogenetic placement among modern elasmobranchs. Genes 12(3):324

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870–1874

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kyne PM, Wang JJ, Xiang D, Chen X, Feutry P (2018) The phylogenomic position of the critically endangered largetooth sawfish Pristis pristis (Rhinopristiformes, Pristidae), inferred from the complete mitochondrial genome. Mitochondr DNA B DNA Resour 3(2):970–971

Article  Google Scholar 

Lim KC, Lim PE, Chong VC, Loh KH (2015) Molecular and morphological analyses reveal phylogenetic relationships of stingrays focusing on the family Dasyatidae (Myliobatiformes). PLoS One 10(4):e0120518

Article  PubMed  PubMed Central  Google Scholar 

Marín A, Serna J, Robles C, Ramírez B, Reyes-Flores LE, Zelada-Mázmela E, ... Alfaro R (2018) A glimpse into the genetic diversity of the Peruvian seafood sector: Unveiling species substitution, mislabeling and trade of threatened species. PLoS One 13(11):e0206596

Article  PubMed  PubMed Central  Google Scholar 

Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE) New Orleans, LA, USA, 2010 (pp. 1–8). https://doi.org/10.1109/GCE.2010.5676129

Miya M, Nishida M (2015) The mitogenomic contributions to molecular phylogenetics and evolution of fishes: a 15-year retrospect. Ichthyol Res 62(1):29–71

Article  Google Scholar 

Nagaike T, Suzuki T, Katoh T, Ueda T (2005) Human mitochondrial mRNAs are stabilized with polyadenylation regulated by mitochondria-specific poly (A) polymerase and polynucleotide phosphorylase. J Biol Chem 280(20):19721–19727

Article  CAS  PubMed  Google Scholar 

Naylor GJ, Caira JN, Jensen K, Rosana KAM, White WT, Last PR (2012) A DNA sequence–based approach to the identification of shark and ray species and its implications for global elasmobranch diversity and parasitology. Bull Am Mus Nat Hist 2012(367):1–262

Article  Google Scholar 

Orrell T, Informatics and Data Science Center - Digital Stewardship (2025) NMNH Extant Specimen Records (USNM, US). Version.94. National Museum of Natural History, Smithsonian Institution. Occurrence dataset https://doi.org/10.15468/hnhrg3 accessed via GBIF.org on 2025-06-13. https://gbif.org/occurrence/1318465575

Pickett BD, Wallace EM, Ridge PG, Kauwe JS (2020) Lingering taxonomic challenges hinder conservation and management of global bonefishes. Fisheries 45(7):347–358

Article  Google Scholar 

Poortvliet M, Olsen JL, Croll DA, Bernardi G, Newton K, Kollias S, Hoarau G (2015) A dated molecular phylogeny of Manta and devil rays (Mobulidae) based on mitogenome and nuclear sequences. Mol Phylogenet Evol 83:72–85

Article  CAS  PubMed  Google Scholar 

Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539–542

Article  PubMed  PubMed Central  Google Scholar 

Sales JBL, de Oliveira CN, dos Santos WCR, Rotundo MM, Ferreira Y, Ready J, da Silva Rodrigues-Filho LF (2019) Phylogeography of eagle rays of the genus Aetobatus: Aetobatus narinari is restricted to the continental Western Atlantic ocean. Hydrobiologia 836:169–183

Article  Google Scholar 

Santillán-Lugo B, Llera-Herrera R, Corro-Espinosa D, Oñate-González EC, Rodríguez-Domínguez G, Saavedra-Sotelo NC (2017) Complete mitochondrial genome of the Devil Ray, Mobula thurstoni (Lloyd, 1908) (Myliobatiformes: Myliobatidae). Mitochondr DNA B Resour 2(2):868–870

Article  Google Scholar 

White WT, Last P (2016) Family Aetobatidae. In: Last PG, Naylor B, Séret, White M, de Stehmann C M (eds) Rays of the world. Csiro Publishing, Clayton

Google Scholar 

White WT, Moore AB (2013) Redescription of Aetobatus flagellum (Bloch & Schneider, 1801), an endangered eagle ray (Myliobatoidea: Myliobatidae) from the indo–West Pacific. Zootaxa 3752(1):199–213

Article  PubMed  Google Scholar 

White WT, Naylor GJ (2016) Resurrection of the family Aetobatidae (Myliobatiformes) for the pelagic eagle rays, genus Aetobatus. Zootaxa 4139(3):435–438

Article  PubMed  Google Scholar 

White WT, Last PR, Naylor GJP, Jensen K, Caira J (2010) Clarification of Aetobatus ocellatus (Kuhl, 1823) as a valid species, and a comparison with Aetobatus narinari (Euphrasen, 1790) (Rajiformes: Myliobatidae). CSIRO Mar Atmos Res 32:141

Google Scholar 

White WT, Furumitsu K, Yamaguchi A (2013) A new species of eagle ray <Emphasis Type="Italic">Aetobatus narutobiei</Emphasis>from the Northwest Pacific: an example of the critical role taxonomy plays in fisheries and ecological sciences. PLoS One 8(12):e83785

Article  PubMed  PubMed Central  Google Scholar 

White WT, Corrigan S, Yang LEI, Henderson AC, Bazinet AL, Swofford DL, Naylor GJ (2018) Phylogeny of the Manta and devil rays (Chondrichthyes: Mobulidae), with an updated taxonomic arrangement for the family. Zool J Linn Soc 182(1):50–75

Article  Google Scholar 

Whitney JL, Coleman RR, Deakos MH (2023) The complete mitochondrial genome of the reef Manta Ray, Mobula alfredi, from Hawaii. Mitochondrial DNA Part B 8(2):197–203

Article  PubMed  PubMed Central  Google Scholar 

Winn JC, Maduna SN, Bester-van der Merwe AE (2024) A comprehensive phylogenomic study unveils evolutionary patterns and challenges in the mitochondrial genomes of carcharhiniformes: a focus on Triakidae. Genomics 116(1):110771

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