Minchenko, A.G. and Dudareva, N.A., Mitokhondrial’nyi genom (Mitochondrial Genome), Salganik, R.I., Ed., Novosibirsk: Nauka, 1990.

Google Scholar 

Cronin, M.A., MacNeil, M.D., and Patton, J.C., Mitochondrial DNA and microsatellite DNA variation in domestic reindeer (Rangifer tarandus tarandus) and relationships with wild caribou (Rangifer tarandus granti, Rangifer tarandus groenlandicus, and Rangifer tarandus caribou), J. Hered., 2006, vol. 97, no. 5, pp. 525—530. https://doi.org/10.1093/jhered/esl012

Article  CAS  PubMed  Google Scholar 

Flagstad, Ø. and Røed, K.H., Refugial origins of reindeer (Rangifer tarandus L.) inferred from mitochondrial DNA sequences, Evolution, 2003, vol. 57, no. 3, pp. 658—670. https://doi.org/10.1111/j.0014-3820.2003.tb01557.x

Article  CAS  PubMed  Google Scholar 

Kvie, K.S., Heggenes, J., and Røed, K.H., Merging and comparing three mitochondrial markers for phylogenetic studies of Eurasian reindeer (Rangifer tarandus), Ecol. Evol., 2016, vol. 6, no. 13, pp. 4347—4358. https://doi.org/10.1002/ece3.2199

Article  PubMed  PubMed Central  Google Scholar 

Burnett, H.A., Bieker, V.C., Le Moullec, M., et al., Contrasting genomic consequences of anthropogenic reintroduction and natural recolonization in high-Arctic wild reindeer, Evol. Appl., 2023, vol. 16, no. 9, pp. 1531—1548. https://doi.org/10.1111/eva.13585

Article  PubMed  PubMed Central  Google Scholar 

Kellner, F.L., Le Moullec, M., Ellegaard, M.R., et al., A palaeogenomic investigation of overharvest implications in an endemic wild reindeer subspecies, Mol. Ecol., 2024, vol. 33, no. 5, p. 17274. https://doi.org/10.1111/mec.17274

Article  Google Scholar 

Dussex, N., Tørresen, O. K., van der Valk, T., et al., Adaptation to the high-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer, iScience, 2023, vol. 26, no. 10, p. 107811. https://doi.org/10.1016/j.isci.2023.107811

Hold, K., Lord, E., Brealey, J.C., et al., Ancient reindeer mitogenomes reveal island-hopping colonisation of the Arctic archipelagos, Sci. Rep., 2024, vol. 14, no. 1, p. 4143. https://doi.org/10.1038/s41598-024-54296-2

Article  CAS  PubMed  PubMed Central  Google Scholar 

Taylor, R.S., Manseau, M., Klütsch, C.F.C., et al., Population dynamics of caribou shaped by glacial cycles before the last glacial maximum, Mol. Ecol., 2021, vol. 30, no. 23, pp. 6121—6143. https://doi.org/10.1111/mec.16166

Article  PubMed  PubMed Central  Google Scholar 

Rogers, A.R. and Harpending, H., Population growth makes waves in the distribution of pairwise genetic differences, Mol. Biol. Evol., 1992, vol. 9, no. 3, p. a040727. https://doi.org/10.1093/oxfordjournals.molbev.a040727

Article  Google Scholar 

Excoffier, L. and Lischer, H.E.L., Arlequin Suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Resour., 2010, vol. 10, pp. 564—567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

Article  PubMed  Google Scholar 

Awadi, A., Ben Slimen, H., Schaschl, H., et al., Positive selection on two mitochondrial coding genes and adaptation signals in hares (genus Lepus) from China, BMC Ecol. Evol., 2021, vol. 21, no. 1, p. 100. https://doi.org/10.1186/s12862-021-01832-7

Article  CAS  Google Scholar 

Graham, A.M., Lavretsky, P., Wilson, R.E., and McCracken, K.G., High-altitude adaptation is accompanied by strong signatures of purifying selection in the mitochondrial genomes of three Andean waterfowl, PLoS One, 2024, vol. 19, no. 1, p. e294842. https://doi.org/10.1371/journal.pone.0294842

Article  CAS  Google Scholar 

Hassanin, A., Ropiquet, A., Couloux, A., and Cruaud, C., Evolution of the mitochondrial genome in mammals living at high altitude: new insights from a study of the tribe caprini (Bovidae, Antilopinae), J. Mol. Evol., 2009, vol. 68, no. 4, pp. 293—310. https://doi.org/10.1007/s00239-009-9208-7

Article  CAS  PubMed  Google Scholar 

Zhu, K., Ge, D., Wen, Z., et al., Evolutionary genetics of hypoxia and cold tolerance in mammals, J. Mol. Evol., 2018, vol. 86, no. 9, pp. 618—634. https://doi.org/10.1007/s00239-018-9870-8

Article  CAS  PubMed  Google Scholar 

Gutiérrez, E.G., Ortega, J., and Baeza, A.J., The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates, BMC Genomics, 2023, vol. 24, no. 1, p. 527. https://doi.org/10.1186/s12864-023-09596-8

Article  CAS  PubMed  PubMed Central  Google Scholar 

Koshkina, O.A., Solov’eva, A.D., Deniskova, T.E., et al., Study of genetic diversity of domestic and wild populations of reindeer (Rangifer tarandus L., 1758) using markers of nuclear and mitochondrial genomes, S-kh. Biol., 2023, vol. 57, no. 6, pp. 1101—1116. https://doi.org/10.15389/agrobiology.2022.6.1101rus

Article  Google Scholar 

Semina, M.T., Kashtanov, S.N., Babayan, O.V., et al., Analysis of the genetic diversity and population structure of the Nenets native breed of reindeer based on microsatellite markers, Russ. J. Genet., 2022, vol. 58, no. 8, pp. 975—987. https://doi.org/10.1134/S1022795422080063

Article  CAS  Google Scholar 

Svishcheva, G.R., Babayan, O.V., Sipko, T.P., et al., Genetic differentiation between coexisting wild and domestic reindeer (Rangifer tarandus L., 1758) in Northern Eurasia, Gen. Resour., 2022, vol. 3, no. 6, pp. 1—14. https://doi.org/10.46265/genresj.UYML5006

Article  Google Scholar 

Stolpovsky, Y.A., Babayan, O.V., Kashtanov, S.N., et al., Genetic evaluation of the breeds of reindeer (Rangifer tarandus) and their wild ancestor using a new panel of STR markers, Russ. J. Genet., 2020, vol. 56, no. 12, pp. 1469—1483. https://doi.org/10.1134/S1022795420120133

Article  CAS  Google Scholar 

Anderson, D.G., Kvie, K.S., Davydov, V.N., and Røed, K.H., Maintaining genetic integrity of coexisting wild and domestic populations: genetic differentiation between wild and domestic Rangifer with long traditions of intentional interbreeding, Ecol. Evol., 2017, vol. 7, no. 17, pp. 6790—6802. https://doi.org/10.1002/ece3.3230

Article  PubMed  PubMed Central  Google Scholar 

Kharzinova, V.R., Dotsev, A.V., Deniskova, T.E., et al., Genetic diversity and population structure of domestic and wild reindeer (Rangifer tarandus L., 1758): a novel approach using BovineHD BeadChip, PLoS One, 2018, vol. 13, no. 11, p. e207944. https://doi.org/10.1371/journal.pone.0207944

Article  CAS  Google Scholar 

Bozlak, E., Pokharel, K., Weldenegodguad, M., et al., Inferences about the population history of Rangifer tarandus from Y chromosome and mtDNA phylogenies, Ecol. Evol., 2024, vol. 14, no. 6, p. e11573. https://doi.org/10.1002/ece3.11573

Article  PubMed  PubMed Central  Google Scholar 

Nei, M. and Kumar, S., Molecular Evolution and Phylogenetics, New York: Oxford Univ. Press, 2000. https://doi.org/10.1093/oso/9780195135848.001.0001

Book  Google Scholar 

Avise, J.C., Phylogeography: The History and Formation of Species, Cambridge, MA: Harvard Univ. Press, 2000.

Book  Google Scholar 

Bushnell, B., BBMap: a fast, accurate, splice-aware aligner. https://escholarship.org/uc/item/1h3515gn. 2014.

Katoh, K., Kuma, K., Toh, H., and Miyata, T., MAFFT version 5: improvement in accuracy of multiple sequence alignment, Nucleic Acids Res., 2005, vol. 33, no. 2, pp. 511—518. https://doi.org/10.1093/nar/gki198

Article  CAS  PubMed  PubMed Central  Google Scholar 

Heino, M.T., Askeyev, I.V., Shaymuratova (Galimova), D.N., et al., 4000-year-old reindeer mitogenomes from the Volga—Kama region reveal continuity among the forest reindeer in northeastern part of European Russia, Arkheol. Evraziiskih Stepei, 2019, vol. 4, pp. 179—190.

Google Scholar 

Lanfear, R., Calcott, B., Ho, S.Y.W., and Guindon, S., PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses, Mol. Biol. Evol., 2012, vol. 29, no. 6, pp. 1695—1701. https://doi.org/10.1093/molbev/mss020

Ronquist, F., Teslenko, M., van der Mark, P., et al., MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 2012, vol. 61, no. 3, pp. 539—542. https://doi.org/10.1093/sysbio/sys029

Article  PubMed  PubMed Central  Google Scholar 

Rambaut, A., Drummond, A.J., Xie, D., et al., Posterior summarisation in Bayesian phylogenetics using Tracer 1.7, Syst. Biol., 2018, vol. 67, no. 5, pp. 901—904. https://doi.org/10.1093/sysbio/syy032

Article  CAS  PubMed  PubMed Central  Google Scholar 

Drummond, A.J. and Rambaut, A., BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evol. Biol., 2007, vol. 7, no. 1, p. 214. https://doi.org/10.1186/1471-2148-7-214

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pelletier, M., Kotiaho, A., Niinimäki, S., et al., Identifying early stages of reindeer domestication in the archaeological record: a 3D morphological investigation on forelimb bones of modern populations from Fennoscandia, Archaeol. Anthropol. Sci., 2020, vol. 12, no. 8, p. 169. https://doi.org/10.1007/s12520-020-01123-0

Article