Abraham W, Rohde M, Bennasar A (2014). The family Caulobacteraceae. In Springer eBooks (pp. 179–205). https://doi.org/10.1007/978-3-642-30197-1_259

Al-Battashi H, Joshi SJ, Pracejus B, Al-Ansari A (2016) The geomicrobiology of chromium (VI) pollution: microbial diversity and its bioremediation potential. Open Biotechnol J 10:379–389. https://doi.org/10.2174/1874070701610010379

Article  CAS  Google Scholar 

Anesio AM, Laybourn-Parry J (2011) Glaciers and ice sheets as a biome. Trends Ecol Evol 27:219–225. https://doi.org/10.1016/j.tree.2011.09.012

Article  PubMed  Google Scholar 

Anesio AM, Lutz S, Chrismas N, Benning LG (2017) The microbiome of glaciers and ice sheets. Npj Biofilms Microbiomes 3:10. https://doi.org/10.1038/s41522-017-0019-0

Article  PubMed  PubMed Central  Google Scholar 

Asaf S, Numan M, Khan AL, Al-Harrasi A (2020) Sphingomonas: from diversity and genomics to functional role in environmental remediation and plant growth. Crit Rev Biotechnol 40:138–152. https://doi.org/10.1080/07388551.2019.1709793

Article  CAS  PubMed  Google Scholar 

Baker BJ, Lazar CS, Teske AP, Dick GJ (2015) Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. Microbiome 3:14. https://doi.org/10.1186/s40168-015-0077-6

Article  PubMed  PubMed Central  Google Scholar 

Baldani JI, Rouws L, Cruz LM, Olivares FL, Schmid M, Hartmann A (2014). The family Oxalobacteraceae. In Springer eBooks (pp. 919–974). https://doi.org/10.1007/978-3-642-30197-1_291

Bernardet J, Bowman JP (2006). The genus Flavobacterium. In Springer eBooks (pp. 481–531). https://doi.org/10.1007/0-387-30747-8_17

Boetius A, Anesio AM, Deming JW, Mikucki JA, Rapp JZ (2015) Microbial ecology of the cryosphere: sea ice and glacial habitats. Nat Rev Microbiol 13:677–690. https://doi.org/10.1038/nrmicro3522

Article  CAS  PubMed  Google Scholar 

Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Caporaso JG (2018) Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome 6:90. https://doi.org/10.1186/s40168-018-0470-z

Article  PubMed  PubMed Central  Google Scholar 

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H et al (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852–857. https://doi.org/10.1038/s41587-019-0209-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13:581–583. https://doi.org/10.1038/nmeth.3869

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen W-M, Yang S-H, Young C-C, Sheu S-Y (2012) Arcicella rigui sp. nov., isolated from water of a wetland, and emended descriptions of the genus Arcicella, Arcicella aquatica, Arcicella rosea and Arcicella aurantiaca. Int J Syst Evol Microbiol 63:134–140. https://doi.org/10.1099/ijs.0.037242-0

Article  CAS  PubMed  Google Scholar 

Chong J, Liu P, Zhou G, Xia J (2020) Using microbiomeanalyst for comprehensive statistical, functional, and meta-analysis of microbiome data. Nat Protoc 15:799–821. https://doi.org/10.1038/s41596-019-0264-1

Article  CAS  PubMed  Google Scholar 

Dedysh SN, Ivanova AA (2018) Planctomycetes in boreal and subarctic wetlands: diversity patterns and potential ecological functions. FEMS Microbiology Ecology 95:fiy227. https://doi.org/10.1093/femsec/fiy227

Article  CAS  Google Scholar 

Delbrassinne L, Mahillon J (2015) Bacillus: occurrence. In: Elsevier eBooks. pp 307–311. https://doi.org/10.1016/b978-0-12-384947-2.00050-7

Dhariwal A, Chong J, Habib S, King IL, Agellon LB, Xia J (2017) MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. Nucleic Acids Res 45:W180–W188. https://doi.org/10.1093/nar/gkx295

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dudgeon D, Arthington AH, Gessner MO, Kawabata Z, Knowler DJ, Lévêque C, Naiman RJ, Prieur‐Richard A, Soto D, Stiassny MLJ, Sullivan CA (2005) Freshwater biodiversity: importance, threats, status and conservation challenges. Biological Reviews/biological Reviews of the Cambridge Philosophical Society 81:163–182. https://doi.org/10.1017/s1464793105006950

Article  PubMed  Google Scholar 

Fallah B, Didovets I, Rostami M, Hamidi M (2024) Climate change impacts on Central Asia: trends, extremes and future projections. Int J Climatol 44:3191–3213. https://doi.org/10.1002/joc.8519

Article  Google Scholar 

Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DBM, Sogin ML, Martiny AC (2012) Global distribution and diversity of marine Verrucomicrobia. ISME J 6:1499–1505. https://doi.org/10.1038/ismej.2012.3

Article  CAS  PubMed  PubMed Central  Google Scholar 

Fujii M, Takano Y, Kojima H, Hoshino T, Tanaka R, Fukui M (2009) Microbial community structure, pigment composition, and nitrogen source of red snow in Antarctica. Microb Ecol 59:466–475. https://doi.org/10.1007/s00248-009-9594-9

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gerhard WA, Gunsch CK (2019) Metabarcoding and machine learning analysis of environmental DNA in ballast water arriving to hub ports. Environ Int 124:312–319. https://doi.org/10.1016/j.envint.2018.12.038

Article  CAS  PubMed  Google Scholar 

Gillan DC, Roosa S, Kunath B, Billon G, Wattiez R (2014) The long-term adaptation of bacterial communities in metal-contaminated sediments: a metaproteogenomic study. Environ Microbiol 17:1991–2005. https://doi.org/10.1111/1462-2920.12627

Article  CAS  PubMed  Google Scholar 

Giller KE, Witter E, McGrath SP (2009) Heavy metals and soil microbes. Soil Biol Biochem 41:2031–2037. https://doi.org/10.1016/j.soilbio.2009.04.026

Article  CAS  Google Scholar 

Glaeser SP, Kämpfer P (2014). The family Sphingomonadaceae. In Springer eBooks (pp. 641–707). https://doi.org/10.1007/978-3-642-30197-1_302

Gleick PH (1993). Water in crisis: a guide to the world’s fresh water resources. In Oxford University Press eBooks.

Guo Y, Gu S, Wu K, Tanentzap AJ, Yu J, Liu X, Li Q, He P, Qiu D, Deng Y, Wang P, Wu Z, Zhou Q (2023) Temperature-mediated microbial carbon utilization in China’s lakes. Glob Change Biol 29:5044–5061. https://doi.org/10.1111/gcb.16840

Article  CAS  Google Scholar 

Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:9

Google Scholar 

Horn M (2015) Neochlamydia. Bergey’s Manual of Systematics of Archaea and Bacteria 1–3. https://doi.org/10.1002/9781118960608.gbm00366

Hu X, Tlili A, Schirmer K, Bao M, Bürgmann H (2025) Metal concentration in freshwater sediments is linked to microbial biodiversity and community composition. Environ Int 199:109465. https://doi.org/10.1016/j.envint.2025.109465

Article  CAS  PubMed  Google Scholar 

Kahlon RS (2016) Biodegradation and bioremediation of organic chemical pollutants by pseudomonas. In Springer eBooks (pp. 343–417). https://doi.org/10.1007/978-3-319-31198-2_9

Kampfer P, Lodders N, Busse H-j (2009) Arcicella rosea sp. nov., isolated from tap water. Int J Syst Evol Microbiol 59:341–344. https://doi.org/10.1099/ijs.0.002675-0

Article  CAS  PubMed  Google Scholar 

Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. https://doi.org/10.1093/molbev/mst010

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39:91–100. https://doi.org/10.1111/j.1574-6941.2002.tb00910.x

Article  CAS  PubMed  Google Scholar 

Lavergne C, Aguilar-Muñoz P, Calle N, Thalasso F, Astorga-España MS, Sepulveda-Jauregui A, Martinez-Cruz K, Gandois L, Mansilla A, Chamy R, Barret M, Cabrol L (2021) Temperature differently affected methanogenic pathways and microbial communities in sub-Antarctic freshwater ecosystems. Environ Int 154:106575. https://doi.org/10.1016/j.envint.2021.106575

Article  CAS  PubMed