Arridge, S., Maass, P., Öktem, O. & Schönlieb, C.-B. (2019). Acta Numer. 28, 1–174.
Web of Science
CrossRef
Google Scholar
Astore, M. A., Woollard, G., Silva-Sánchez, D., Zhao, W., Dao Duc, K., Grigorieff, N., Cossio, P. & Hanson, S. M. (2023). The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge. https://osf.io/8h6fz/.
Google Scholar
Blaschke, T. (2010). ISPRS J. Photogram. Remote Sens. 65, 2–16.
Google Scholar
Bojarski, M., Testa, D. D., Dworakowski, D., Firner, B., Flepp, B., Goyal, P., Jackel, L. D., Monfort, M., Muller, U., Zhang, J., Zhang, X., Zhao, J. & Zieba, K. (2016). arXiv:1604.07316.
Google Scholar
Breugel, F. van, Kutz, J. N. & Brunton, B. W. (2020). IEEE Access, 8, 196865–196877.
PubMed
Google Scholar
Bronstein, M. M., Bruna, J., Cohen, T. & Veličković, P. (2021). arXiv:2104.13478.
Google Scholar
Brzezinski, P. (2017). The Development of Cryo-Electron Microscopy. https://www.nobelprize.org/uploads/2018/06/advanced-chemistryprize2017.pdf.
Google Scholar
Chen, M. & Ludtke, S. J. (2021). Nat. Methods, 18, 930–936.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Chen, M., Toader, B. & Lederman, R. (2023). J. Mol. Biol. 435, 168014.
PubMed
Google Scholar
Cheng, Z., Esteves, C., Jampani, V., Kar, A., Maji, S. & Makadia, A. (2023). arXiv:2306.05410.
Google Scholar
Corso, G., El Nesr, G. & Wayment-Steele, H. K. (2024). PRX Life, 2, 040001.
Google Scholar
Cossio, P. & Hummer, G. (2013). J. Struct. Biol. 184, 427–437.
CAS
PubMed
Google Scholar
Cossio, P., Rohr, D., Baruffa, F., Rampp, M., Lindenstruth, V. & Hummer, G. (2017). Comput. Phys. Commun. 210, 163–171.
CAS
Google Scholar
Dingeldein, L., Cossio, P. & Covino, R. (2024). Curr. Opin. Struct. Biol. 91, 102988.
Google Scholar
Dingeldein, L., Silva-Sánchez, D., Evans, L., D'Imprima, E., Grigorieff, N., Covino, R. & Cossio, P. (2024). bioRxiv, 2024.07.23.604154.
Google Scholar
Donnat, C., Levy, A., Poitevin, F., Zhong, E. D. & Miolane, N. (2022). J. Struct. Biol. 214, 107920.
PubMed
Google Scholar
Edelberg, D. G. & Lederman, R. R. (2023). arXiv:303.07487.
Google Scholar
Eslami, S. M. A., Jimenez Rezende, D., Besse, F., Viola, F., Morcos, A. S., Garnelo, M., Ruderman, A., Rusu, A. A., Danihelka, I., Gregor, K., Reichert, D. P., Buesing, L., Weber, T., Vinyals, O., Rosenbaum, D., Rabinowitz, N., King, H., Hillier, C., Botvinick, M., Wierstra, D., Kavukcuoglu, K. & Hassabis, D. (2018). Science, 360, 1204–1210.
CAS
PubMed
Google Scholar
Glaeser, R. M., Nogales, E. & Chiu, W. (2021). Editors. Single-particle Cryo-EM of Biological Macromolecules. Bristol: IOP Publishing.
Google Scholar
Grant, T., Rohou, A. & Grigorieff, N. (2018). eLife, 7, e35383.
Web of Science
CrossRef
PubMed
Google Scholar
Gupta, H., Phan, T. H., Yoo, J. & Unser, M. (2020). Computer Vision – ECCV 2020 Workshops, edited by A. Bartoli & A. Fusiello, pp. 429–444. Cham: Springer.
Google Scholar
Heel, M. van & Harauz, G. (1986). Optik, 78, 146–156.
Google Scholar
Herreros, D., Lederman, R. R., Krieger, J. M., Jiménez-Moreno, A., Martínez, M., Myška, D., Strelak, D., Filipovic, J., Sorzano, C. O. S. & Carazo, J. M. (2023). Nat Commun, 14, 154.
PubMed
Google Scholar
Herreros, D., Mata, C., Noddings, C., Irene, D., Krieger, J., Agard, D., Tsai, M.-D., Sorzano, C. & Carazo, J. (2024). bioRxiv, 2024.09.16.613176.
Google Scholar
Himes, B. & Grigorieff, N. (2021). IUCrJ, 8, 943–953.
Web of Science
CrossRef
CAS
PubMed
IUCr Journals
Google Scholar
Hooker, S. (2021). Commun. ACM, 64, 58–65.
Google Scholar
Jensen, G. J. (2010). Editor. Methods in Enzymology, Vol. 482, Cryo-EM, Part B: 3-D Reconstruction. San Diego: Academic Press.
Google Scholar
Jeon, M., Raghu, R., Astore, M., Woollard, G., Feathers, R., Kaz, A., Hanson, S. M., Cossio, P. & Zhong, E. D. (2024). arXiv:2408.05526.
Google Scholar
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., Back, T., Petersen, S., Reiman, D., Clancy, E., Zielinski, M., Steinegger, M., Pacholska, M., Berghammer, T., Bodenstein, S., Silver, D., Vinyals, O., Senior, A. W., Kavukcuoglu, K., Kohli, P. & Hassabis, D. (2021). Nature, 596, 583–589.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Kerbl, B., Kopanas, G., Leimkuehler, T. & Drettakis, G. (2023). ACM Trans. Graph. 42, 1–14.
Google Scholar
Kimanius, D., Dong, L., Sharov, G., Nakane, T. & Scheres, S. H. W. (2021). Biochem. J. 478, 4169–4185.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Kimanius, D., Jamali, K. & Scheres, S. H. W. (2022). Adv. Neural Inf. Process. Syst. 35, 12395–12408
Google Scholar
Kimanius, D., Jamali, K., Wilkinson, M. E., Lövestam, S., Velazhahan, V., Nakane, T. & Scheres, S. H. W. (2024). Nat. Methods, 21, 1216–1221.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Kimanius, D., Zickert, G., Nakane, T., Adler, J., Lunz, S., Schönlieb, C.-B., Öktem, O. & Scheres, S. H. W. (2021). IUCrJ, 8, 60–75.
Web of Science
CrossRef
CAS
PubMed
IUCr Journals
Google Scholar
Kirkland, E. J. (2020). Advanced Computing in Electron Microscopy. Cham: Springer International.
Google Scholar
Kleywegt, G. J., Adams, P. D., Butcher, S. J., Lawson, C. L., Rohou, A., Rosenthal, P. B., Subramaniam, S., Topf, M., Abbott, S., Baldwin, P. R., Berrisford, J. M., Bricogne, G., Choudhary, P., Croll, T. I., Danev, R., Ganesan, S. J., Grant, T., Gutmanas, A., Henderson, R., Heymann, J. B., Huiskonen, J. T., Istrate, A., Kato, T., Lander, G. C., Lok, S.-M., Ludtke, S. J., Murshudov, G. N., Pye, R., Pintilie, G. D., Richardson, J. S., Sachse, C., Salih, O., Scheres, S. H. W., Schroeder, G. F., Sorzano, C. O. S., Stagg, S. M., Wang, Z., Warshamanage, R., Westbrook, J. D., Winn, M. D., Young, J. Y., Burley, S. K., Hoch, J. C., Kurisu, G., Morris, K., Patwardhan, A. & Velankar, S. (2024). IUCrJ, 11, 140–151.
Web of Science
CrossRef
CAS
PubMed
IUCr Journals
Google Scholar
Klindt, D. A., Hyvärinen, A., Levy, A., Miolane, N. & Poitevin, F. (2024). Front. Mol. Biosci. 11, 1393564.
PubMed
Google Scholar
Koo, B., Martel, J., Peck, A., Levy, A., Poitevin, F. & Miolane, N. (2023). arXiv:2306.07274.
Google Scholar
Kopanas, G., Philip, J., Leimkühler, T. & Drettakis, G. (2021). Comput. Graph. Forum, 40, 29–43.
Google Scholar
Lander, G. C. (2024). Curr. Opin. Struct. Biol. 89, 102918.
PubMed
Google Scholar
Lavin, A., Zenil, H., Paige, B., Krakauer, D., Gottschlich, J., Mattson, T., Anandkumar, A., Choudry, S., Rocki, K., Baydin, A. G., Prunkl, C., Paige, B., Isayev, O., Peterson, E., McMahon, P. L., Macke, J., Cranmer, K., Zhang, J., Wainwright, H., Hanuka, A., Veloso, M., Assefa, S., Zheng, S. & Pfeffer, A. (2021). arXiv:2112.03235.
Google Scholar
Lawson, C. L., Kryshtafovych, A., Adams, P. D., Afonine, P. V., Baker, M. L., Barad, B. A., Bond, P., Burnley, T., Cao, R., Cheng, J., Chojnowski, G., Cowtan, K., Dill, K. A., DiMaio, F., Farrell, D. P., Fraser, J. S., Herzik, M. A., Hoh, S. W., Hou, J., Hung, L.-W., Igaev, M., Joseph, A. P., Kihara, D., Kumar, D., Mittal, S., Monastyrskyy, B., Olek, M., Palmer, C. M., Patwardhan, A., Perez, A., Pfab, J., Pintilie, G. D., Richardson, J. S., Rosenthal, P. B., Sarkar, D., Schäfer, L. U., Schmid, M. F., Schröder, G. F., Shekhar, M., Si, D., Singharoy, A., Terashi, G., Terwilliger, T. C., Vaiana, A., Wang, L., Wang, Z., Wankowicz, S. A., Williams, C. J., Winn, M., Wu, T., Yu, X., Zhang, K., Berman, H. M. & Chiu, W. (2021). Nat. Methods, 18, 156–164.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Lawson, C. L., Kryshtafovych, A., Pintilie, G. D., Burley, S. K., Černý, J., Chen, V. B., Emsley, P., Gobbi, A., Joachimiak, A., Noreng, S., Prisant, M. G., Read, R. J., Richardson, J. S., Rohou, A. L., Schneider, B., Sellers, B. D., Shao, C., Sourial, E., Williams, C. I., Williams, C. J., Yang, Y., Abbaraju, V., Afonine, P. V., Baker, M. L., Bond, P. S., Blundell, T. L., Burnley, T., Campbell, A., Cao, R., Cheng, J., Chojnowski, G., Cowtan, K. D., DiMaio, F., Esmaeeli, R., Giri, N., Grubmüller, H., Hoh, S. W., Hou, J., Hryc, C. F., Hunte, C., Igaev, M., Joseph, A. P., Kao, W.-C., Kihara, D., Kumar, D., Lang, L., Lin, S., Maddhuri Venkata Subramaniya, S. R., Mittal, S., Mondal, A., Moriarty, N. W., Muenks, A., Murshudov, G. N., Nicholls, R. A., Olek, M., Palmer, C. M., Perez, A., Pohjolainen, E., Pothula, K. R., Rowley, C. N., Sarkar, D., Schäfer, L. U., Schlicksup, C. J., Schröder, G. F., Shekhar, M., Si, D., Singharoy, A., Sobolev, O. V., Terashi, G., Vaiana, A. C., Vedithi, S. C., Verburgt, J., Wang, X., Warshamanage, R., Winn, M. D., Weyand, S., Yamashita, K., Zhao, M., Schmid, M. F., Berman, H. M. & Chiu, W. (2024). Nat. Methods, 21, 1340–1348.
CAS
PubMed
Google Scholar
Levy, A., Grzadkowski, M., Poitevin, F., Vallese, F., Clarke, O. B., Wetzstein, G. & Zhong, E. D. (2024). bioRxiv, 2024.05.30.596729.
Google Scholar
Levy, A., Matthews, M., Sela, M., Wetzstein, G. & Lagun, D. (2023). arXiv:2303.08096.
Google Scholar
Levy, A., Poitevin, F., Martel, J., Nashed, Y., Peck, A., Miolane, N., Ratner, D., Dunne, M. & Wetzstein, G. (2022). Computer Vision – ECCV 2022, edited by S. Avidan, G. Brostow, M. Cissé, G. M. Farinella & T. Hassner, pp. 540–557. Cham: Springer Nature Switzerland.
Google Scholar
Levy, A., Raghu, R., Shustin, D., Peng, A. R.-Y., Li, H., Clarke, O. B., Wetzstein, G. & Zhong, E. D. (2024). Thirty-eighth Annual Conference on Neural Information Processing Systems.
Google Scholar
Levy, A., Wetzstein, G., Martel, J., Poitevin, F. & Zhong, E. D. (2022). Adv. Neural Inf. Process. Syst. 35, 13038–13049.
PubMed
Google Scholar
Li, H., Yu, Z., Zhao, Q., Luo, Y., Cheng, S., Zhong, T., Woo, C. M., Liu, H., Wang, L. V., Zheng, Y. & Lai, P. (2023). Photon. Res. 11, 631.
Google Scholar
Li, Y., Zhou, Y., Yuan, J., Ye, F. & Gu, Q. (2024). Nat. Methods, 21, 2318–2326.
CAS
PubMed
Google Scholar
Lin, C.-H., Ma, W.-C., Torralba, A. & Lucey, S. (2021). 2021 IEEE/CVF International Conference on Computer Vision (ICCV), pp. 5741–5751. Piscataway: IEEE.
Google Scholar
Lobato, I. & Van Dyck, D. (2014). Acta Cryst. A70, 636–649.
Web of Science
CrossRef
IUCr Journals
Google Scholar
Lu, Y., Jiang, K., Levine, J. A. & Berger, M. (2021). Comput. Graph. Forum, 40, 135–146.
Google Scholar
Meng, E. C., Goddard, T. D., Pettersen, E. F., Couch, G. S., Pearson, Z. J., Morris, J. H. & Ferrin, T. E. (2023). Protein Sci. 32, e4792.
Web of Science
CrossRef
PubMed
Google Scholar
Meng, Q., Chen, A., Luo, H., Wu, M., Su, H., Xu, L., He, X. & Yu, J. (2021). 2021 IEEE/CVF International Conference on Computer Vision (ICCV), pp. 6351–6361. Piscataway: IEEE.
Google Scholar
Mildenhall, B., Srinivasan, P. P., Tancik, M., Barron, J. T., Ramamoorthi, R. & Ng, R. (2020). Computer Vision – ECCV 2020 Workshops, edited by A. Bartoli & A. Fusiello, pp. 405–421. Cham: Springer.
Google Scholar
Mildenhall, B., Srinivasan, P. P., Tancik, M., Barron, J. T., Ramamoorthi, R. & Ng, R. (2022). Commun. ACM, 65, 99–106.
Google Scholar
Mukherjee, S., Carioni, M., Öktem, O. & Schönlieb, C.-B. (2021). NIPS'21: Proceedings of the 35th International Conference on Neural Information Processing Systems, pp. 21413–21425. Red Hook: Curran Associates.
Google Scholar
Müller, T., Evans, A., Schied, C. & Keller, A. (2022). ACM Trans. Graph. 41, 102.
Google Scholar
Müller, T., Mcwilliams, B., Rousselle, F., Gross, M. & Novák, J. (2019). ACM Trans. Graph. 38, 145.
Google Scholar
Müller, T., Rousselle, F., Keller, A. & Novák, J. (2020). ACM Trans. Graph. 39, 243.
Google Scholar
Müller, T., Rousselle, F., Novák, J. & Keller, A. (2021). ACM Trans. Graph. 40, 36.
Google Scholar
Nashed, Y., Peck, A., Martel, J., Levy, A., Koo, B., Wetzstein, G., Miolane, N., Ratner, D. & Poitevin, F. (2022). arXiv:2209.15121.
Google Scholar
Nashed, Y. S. G., Poitevin, F., Gupta, H., Woollard, G., Kagan, M., Yoon, C. H. & Ratner, D. (2021). 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), pp. 4049–4059. Piscataway: IEEE.
Google Scholar
Nguyen, N., Liang, F., Engel, D., Bohak, C., Strnad, O., Ropinski, T. & Viola, I. (2024). 2024 IEEE 17th Pacific Visualization Conference (PacificVis), pp. 62–71. Piscataway: IEEE.
Google Scholar
Ongie, G., Jalal, A., Metzler, C. A., Baraniuk, R. G., Dimakis, A. G. & Willett, R. (2020). IEEE J. Sel. Areas Inf. Theory, 1, 39–56.
Google Scholar
Papillon, M., Sanborn, S., Hajij, M. & Miolane, N. (2023). arXiv:2304.10031.
Google Scholar
Park, K., Sinha, U., Hedman, P., Barron, J. T., Bouaziz, S., Goldman, D. B., Martin-Brualla, R. & Seitz, S. M. (2021). ACM Trans. Graph. 40, 238.
Google Scholar
Parkhurst, J. M., Dumoux, M., Basham, M., Clare, D., Siebert, C. A., Varslot, T., Kirkland, A., Naismith, J. H. & Evans, G. (2021). Open Biol. 11, 210160.
Web of Science
CrossRef
PubMed
Google Scholar
Penczek, P. A. (2010). Methods Enzymol. 482, 73–100.
Web of Science
CrossRef
CAS
PubMed
Google Scholar
Petitjean, A., Poirier-Ginter, Y., Tewari, A., Cordonnier, G. & Drettakis, G. (2023). Comput. Graph. Forum, 42, e14888.
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