Liu, C. X. & Chen, L. L. Circular RNAs: Characterization, cellular roles, and applications. Cell 185, 2016–2034 (2022).
Article CAS PubMed Google Scholar
Glazar, P., Papavasileiou, P. & Rajewsky, N. circBase: a database for circular RNAs. RNA 20, 1666–1670 (2014).
Article CAS PubMed PubMed Central Google Scholar
Wu, W., Zhao, F. & Zhang, J. circAtlas 3.0: a gateway to 3 million curated vertebrate circular RNAs based on a standardized nomenclature scheme. Nucleic Acids Res. 52, D52–D60 (2024).
Article CAS PubMed PubMed Central Google Scholar
Zhai, S. N. et al. CIRCpedia v3: an interactive database for circular RNA characterization and functional exploration. Nucleic Acids Res. 54, D78–D88 (2026).
Article PubMed PubMed Central Google Scholar
Xia, S. et al. Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes. Brief Bioinform. 18, 984–992 (2017).
Xu, X. et al. PlantcircBase 7.0: Full-length transcripts and conservation of plant circRNAs. Plant Commun. 3, 100343 (2022).
Article CAS PubMed PubMed Central Google Scholar
Fu, P., Cai, Z., Zhang, Z., Meng, X. & Peng, Y. An updated database of virus circular RNAs provides new insights into the biogenesis mechanism of the molecule. Emerg. Microbes Infect. 12, 2261558 (2023).
Article PubMed PubMed Central Google Scholar
Zou, L. et al. circASbase: a comprehensive database of alternative splicing events in circRNAs. Genom. Proteomics Bioinformatics https://doi.org/10.1093/gpbjnl/qzaf121 (2025).
Li, Y. et al. m6A2Circ: a comprehensive database for decoding the regulatory relationship between m6A modification and circular RNA. Comput. Struct. Biotechnol. J. 27, 813–820 (2025).
Article CAS PubMed PubMed Central Google Scholar
Zhang, H. et al. CircTarget: a comprehensive database of circRNA-target RNA interactions across multiple cell types. Nucleic Acids Res. 54, D89–D97 (2026).
Article PubMed PubMed Central Google Scholar
Huang, W. et al. TransCirc: an interactive database for translatable circular RNAs based on multi-omics evidence. Nucleic Acids Res. 49, D236–D242 (2021).
Article CAS PubMed PubMed Central Google Scholar
Xu, Y., Yang, L., Tang, Y., Wang, Y. & Wang, H. riboCIRC v2.0: an expanded resource for translatable CircRNAs. Nucleic Acids Res. 54, D273–D278 (2026).
Article PubMed PubMed Central Google Scholar
Sun, Z. Y. et al. circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations. Nucleic Acids Res. 52, D1193–D1200 (2024).
Article CAS PubMed PubMed Central Google Scholar
Dong, X. et al. CircAge: a comprehensive resource for aging-associated circular rnas across species and tissues. Genom. Proteomics Bioinformatics 23, qzaf044 (2025).
O’Leary, E., Jiang, Y., Kristensen, L. S., Hansen, T. B. & Kjems, J. The therapeutic potential of circular RNAs. Nat. Rev. Genet. 26, 230–244 (2025).
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