Bairu MW, Aremu AO, Van Staden J (2011) Somaclonal variation in plants: causes and detection methods. Plant Growth Regul 63:147–173. https://doi.org/10.1007/s10725-010-9554-x
Bock R (2015) Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Annu Rev Plant Biol 66:211–241. https://doi.org/10.1146/annurev-arplant-050213-040212
Boutilier K, Offringa R, Sharma VK, Kieft H, Ouellet T, Zhang L, Hattori J, Liu CM, van Lammeren AA, Miki BL, Custers JB, van Lookeren Campagne MM (2002) Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell 14:1737–1749. https://doi.org/10.1105/tpc.001941
Article CAS PubMed PubMed Central Google Scholar
Candela M, Velazquez I, De La Cruz B, Sendino AM, De La Peña A (2001) Differences in in vitro plant regeneration ability among four Arabidopsis thaliana ecotypes. In Vitro Cell Dev Biol - Plant 37:638–643. https://doi.org/10.1007/s11627-001-0111-1
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735–743. https://doi.org/10.1046/j.1365-313x.1998.00343.x
Article CAS PubMed Google Scholar
Dolezel J, Greilhuber J, Suda J (2007) Estimation of nuclear DNA content in plants using flow cytometry. Nat Protoc 2:2233–2244. https://doi.org/10.1038/nprot.2007.310
Article CAS PubMed Google Scholar
Galbraith DW, Harkins KR, Knapp S (1991) Systemic endopolyploidy in Arabidopsis thaliana. Plant Physiol 96:985–989. https://doi.org/10.1104/pp.96.3.985
Article CAS PubMed PubMed Central Google Scholar
Greiner S, Golczyk H, Malinova I, Pellizzer T, Bock R, Börner T, Herrmann RG (2020) Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development. Plant J 102:730–746. https://doi.org/10.1111/tpj.14658
Article CAS PubMed Google Scholar
Hajdukiewicz P, Svab Z, Maliga P (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25:989–994. https://doi.org/10.1007/BF00014672
Article CAS PubMed Google Scholar
Heidmann I, de Lange B, Lambalk J, Angenent GC, Boutilier K (2011) Efficient sweet pepper transformation mediated by the BABY BOOM transcription factor. Plant Cell Rep 30:1107–1115. https://doi.org/10.1007/s00299-011-1018-x
Article CAS PubMed PubMed Central Google Scholar
Horstman A, Li M, Heidmann I, Weemen M, Chen B, Muino JM, Angenent GC, Boutilier K (2017) The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis. Plant Physiol 175:848–857. https://doi.org/10.1104/pp.17.00232
Article CAS PubMed PubMed Central Google Scholar
Horstman A, Willemsen V, Boutilier K, Heidstra R (2014) AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci 19:146–157. https://doi.org/10.1016/j.tplants.2013.10.010
Article CAS PubMed Google Scholar
Kang BC, Bae SJ, Lee S, Lee JS, Kim A, Lee H, Baek G, Seo H, Kim J, Kim JS (2021) Chloroplast and mitochondrial DNA editing in plants. Nat Plants 7:899–905. https://doi.org/10.1038/s41477-021-00943-9
Article CAS PubMed PubMed Central Google Scholar
Lee LY, Kononov ME, Bassuner B, Frame BR, Wang K, Gelvin SB (2007) Novel plant transformation vectors containing the superpromoter. Plant Physiol 145:1294–1300. https://doi.org/10.1104/pp.107.106633
Article CAS PubMed PubMed Central Google Scholar
Lindsey BE, Rivero L, Calhoun CS, Grotewold E, Brkljacic J (2017) Standardized method for high-throughput sterilization of Arabidopsis seeds. J Vis Exp 128:e56587. https://doi.org/10.3791/56587
Lutz KA, Martin C, Khairzada S, Maliga P (2015) Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture. Plant Cell Rep 34:1849–1856. https://doi.org/10.1007/s00299-015-1832-7
Article CAS PubMed Google Scholar
Lutz KA, Svab Z, Maliga P (2006) Construction of marker-free transplastomic tobacco using the Cre-loxP site-specific recombination system. Nat Protoc 1:900–910. https://doi.org/10.1038/nprot.2006.118
Article CAS PubMed Google Scholar
Maliga P (2022) Engineering the plastid and mitochondrial genomes of flowering plants. Nat Plants 8:996–1006. https://doi.org/10.1038/s41477-022-01227-6
Article CAS PubMed Google Scholar
Matsuoka A, Maliga P (2021) Prospects for reengineering Agrobacterium tumefaciens for T-DNA delivery to chloroplasts. Plant Physiol 186:215–220. https://doi.org/10.1093/plphys/kiab081
Article CAS PubMed PubMed Central Google Scholar
Melaragno JE, Mehrotra B, Coleman AW (1993) Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis. Plant Cell 5:1661–1668. https://doi.org/10.1105/tpc.5.11.1661
Article PubMed PubMed Central Google Scholar
Mirzaee M, Best C, Maliga P (2025) CRISPR-Cas9 for chloroplast genome engineering. Nat Plants in review
Motte H, Galuszka P, Spíchal L, Tarkowski P, Plíhal O, Šmehilová M, Jaworek P, Vereecke D, Werbrouck S, Geelen D (2013) Phenyl-adenine, identified in a LIGHT-DEPENDENT SHORT HYPOCOTYLS4-assisted chemical screen, is a potent compound for shoot regeneration through the inhibition of CYTOKININ OXIDASE/DEHYDROGENASE activity. Plant Physiol 161:1229–1241. https://doi.org/10.1104/pp.112.210716
Article CAS PubMed PubMed Central Google Scholar
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco cultures. Physiol Plant 15:473–497. https://doi.org/10.1111/j.1399-3054.1962.tb08052.x
Nakazato I, Arimura S (2024) Genome editing in angiosperm chloroplasts: targeted DNA double-strand break and base editing. Plant J 120:872–880. https://doi.org/10.1111/tpj.17027
Article CAS PubMed Google Scholar
Ni M, Cui D, Einstein J, Narasimhulu S, Vergara CE, Gelvin SB (1995) Strength and tissue specificity of chimeric promoters derived from the octopine and mannopine synthase genes. Plant J 7:661–676. https://doi.org/10.1046/j.1365-313X.1995.7040661.x
Nole-Wilson S, Tranby TL, Krizek BA (2005) AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. Plant Mol Biol 57:613–628. https://doi.org/10.1007/s11103-005-0955-6
Article CAS PubMed Google Scholar
Orzechowska M, Stępień K, Kamińska T, Siwińska D (2013) Chromosome variations in regenerants of Arabidopsis thaliana derived from 2- and 6-week-old callus detected using flow cytometry and FISH analyses. Plant Cell Tiss Org Cult 112:263–273. https://doi.org/10.1007/s11240-012-0232-8
Parker N, Wang Y, Meinke D (2014) Natural variation in sensitivity to a loss of chloroplast translation in Arabidopsis. Plant Physiol 166:2013–2027. https://doi.org/10.1104/pp.114.249052
Article CAS PubMed PubMed Central Google Scholar
Passarinho P, Ketelaar T, Xing M, van Arkel J, Maliepaard C, Hendriks MW, Joosen R, Lammers M, Herdies L, den Boer B, van der Geest L, Boutilier K (2008) BABY BOOM target genes provide diverse entry points into cell proliferation and cell growth pathways. Plant Mol Biol 68:225–237. https://doi.org/10.1007/s11103-008-9364-y
Article CAS PubMed Google Scholar
Rascón-Cruz Q, González-Barriga CD, Iglesias-Figueroa BF, Trejo-Muñoz JC, Siqueiros-Cendón T,
Comments (0)