Ayil-Gutiérrez B, Galaz-Ávalos RM, Peña-Cabrera E, Loyola-Vargas VM (2013) Dynamics of the concentration of IAA and some of its conjugates during the induction of somatic embryogenesis in Coffea canephora. Plant Signal Behav 8:e26998. https://doi.org/10.4161/psb.26998
Article CAS PubMed PubMed Central Google Scholar
Bai YW, Ma YJ, Chang YT, Zhang WB, Deng YY, Zhang N, Zhang X, Fan KK, Hu XM, Wang SH, Jiang ZH, Hu T (2023) Identification and transcriptome data analysis of ARF family genes in five Orchidaceae species. Plant Mol Biol 112:85–98. https://doi.org/10.1007/s11103-023-01354-4
Article CAS PubMed Google Scholar
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren JY, Li WW, Noble WS (2009) MEME suite: tools for motif discovery and searching. Nuc Acid Res 37:202–208. https://doi.org/10.1093/nar/gkp335
Bao DF, Chang SQ, Li XD, Qi YH (2024) Advances in the study of auxin early response genes: Aux/IAA, GH3, and SAUR. Crop J 12:964–978. https://doi.org/10.1016/j.cj.2024.06.011
Butel N, Qiu Y, Xu W, Santos-González J, Köhler C (2024) Parental conflict driven regulation of endosperm cellularization by a family of auxin response factors. Nat Plants 10:1018–1026. https://doi.org/10.1038/s41477-024-01706-y
Article CAS PubMed PubMed Central Google Scholar
Caeiro A, Caeiro S, Correia S, Canhoto J (2022) Induction of somatic embryogenesis in tamarillo (Solanum betaceum Cav.) involves increases in the endogenous auxin indole-3-acetic acid. Plants 11:1347. https://doi.org/10.3390/plants11101347
Article CAS PubMed PubMed Central Google Scholar
Cancé C, Martin-Arevalillo R, Boubekeur K, Dumas R (2022) Auxin response factors are keys to the many auxin doors. New Phytol 235:402–419. https://doi.org/10.1111/nph.18159
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y (2020) TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant 13:1194–1202. https://doi.org/10.1101/289660
Article CAS PubMed Google Scholar
Cheng ZJ, Wang L, Sun W, Zhang Y, Zhou C, Su YH, Li W, Sun TT, Zhao XY, Li XG, Cheng YF, Zhao YD, Xie Q, Zhang XS (2013) Pattern of auxin and cytokinin responses for shoot meristem induction results from the regulation of cytokinin biosynthesis by AUXIN RESPONSE FACTOR3. Plant Physiol 161:240–251. https://doi.org/10.1104/pp.112.203166
Article CAS PubMed Google Scholar
Dai XH, Lu Q, Wang J, Wang LL, Xiang FN, Liu ZH (2020) MiR160 and its target genes ARF10, ARF16, and ARF17 modulate hypocotyl elongation in a light, BRZ, or PAC-dependent manner in Arabidopsis: miR160 promotes hypocotyl elongation. Plant Sci 303:110686. https://doi.org/10.1016/j.plantsci.2020.110686
Article CAS PubMed Google Scholar
Dolf W, Eva B, Katja EJ, Alexandra S, Thorsten H, Marika K, Jill CW, Jason WR, Gerd J (2005) Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO J 24:1874–1885. https://doi.org/10.1038/sj.emboj.7600659
Du H, Liu HB, Xiong LZ (2013) Endogenous auxin and jasmonic acid levels are differentially modulated by abiotic stresses in rice. Front Plant Sci 4:397. https://doi.org/10.3389/fpls.2013.00397
Article PubMed PubMed Central Google Scholar
Duan ZC, Zhang ZY, Lin YJ (2021) Auxin pathway in process of rice callus induction. J Huazhong Agric Univ 40:98–104
Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, Reed JW (2005) AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132:4563–4574. https://doi.org/10.1242/dev.02012
Article CAS PubMed Google Scholar
Gan ZY, Pan XJ, Li Q, Duan M, Zhang WE (2023a) Establishment of adventitious bud regeneration system in leaf sheath of Canna ×generalis. Plant Physiol 59:1543–1554. https://doi.org/10.13592/j.cnki.ppj.100478
Gan ZY, Shu ML, Yang F, Wang GF, Zhang WE, Pan XJ (2023b) Somatic embryo induction and plantlet regeneration of Canna × generalis from immature zygotic embryo. Plant Cell Tiss Org Cult 155:681–692. https://doi.org/10.1007/s11240-023-02588-2
Gliwicka M, Nowak K, Balazadeh S, Mueller-Roeber B, Gaj MD (2013) Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS One 8:e69261. https://doi.org/10.1371/journal.pone.0069261
Article CAS PubMed PubMed Central Google Scholar
Goetz M, Vivian-Smith A, Johnson SD, Koltunow AM (2006) Auxin RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell 18:1873–1886. https://doi.org/10.1105/tpc.105.037192
Article CAS PubMed PubMed Central Google Scholar
Guilfoyle TJ (2015) The PB1 domain in Auxin Response Factor and Aux/IAA proteins: a versatile protein interaction module in the auxin response. Plant Cell 27:33–43. https://doi.org/10.1105/tpc.114.132753
Han S, Hwang I (2017) Integration of multiple signaling pathways shapes the auxin response. J Exp Bot 69:189–200. https://doi.org/10.1093/jxb/erx232
Hatanaka T, Arakawa O, Yasuda T, Uchida N, Yamaguchi T (1991) Effect of plant growth regulators on somatic embryogenesis in leaf cultures of Coffea canephora. Plant Cell Rep 10:179–182. https://doi.org/10.1007/bf00234290
Article CAS PubMed Google Scholar
Huang KL, Ma GJ, Zhang ML, Xiong H, Wu H, Zhao CZ, Liu CS, Jia HX, Chen L, Kjorven JO, Li XB, Ren F (2018) The ARF7 and ARF19 transcription factors positively regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis roots. Plant Physiol 178:413–427. https://doi.org/10.1104/pp.17.01713
Article CAS PubMed PubMed Central Google Scholar
Kang HI, Lee CB, Kwon SH, Park JM, Kang KS, Shim D (2021) Comparative transcriptome analysis during developmental stages of direct somatic embryogenesis in Tilia amurensis Rupr. Sci Rep 11:6359. https://doi.org/10.1038/s41598-021-85886-z
Article CAS PubMed PubMed Central Google Scholar
Karami O, Philipsen C, Rahimi A, Nurillah AR, Boutilier K, Offringa R (2022) Endogenous auxin maintains embryonic cell identity and promotes somatic embryo development in Arabidopsis. Plant J 113:7–22. https://doi.org/10.1111/tpj.16024
Article CAS PubMed PubMed Central Google Scholar
Katel S, Mandal HR, Kattel S, Yadav SPS, Lamshal BS (2022) Impacts of plant growth regulators in strawberry plant: a review. Heliyon 8:e11959. https://doi.org/10.1016/j.heliyon.2022.e11959
Article CAS PubMed PubMed Central Google Scholar
Koichiro T, Glen S, Sudhir K (2021) MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol 38:3022–3027. https://doi.org/10.1093/molbev/msab120
Lau S, De Smet I, Kolb M, Meinhardt H, Jürgens G (2011) Auxin triggers a genetic switch. Nat Cell Biol 13:611–615. https://doi.org/10.1038/ncb2212
Article CAS PubMed Google Scholar
Lee HW, Cho C, Pandey SK, Park Y, Kim MJ, Kim J (2019) LBD16 and LBD18 acting downstream of ARF7 and ARF19 are involved in adventitious root formation in Arabidopsis. BMC Plant Biol 19:46. https://doi.org/10.1186/s12870-019-1659-4
Article CAS PubMed PubMed Central Google Scholar
Lee K, Park OS, Seo PJ (2018) JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis. Plant J 95:961–975. https://doi.org/10.1111/tpj.14002
Article CAS PubMed Google Scholar
Li MF, Justyna WM, Iris H, Anneke H, Chen BJ, Ricardo R, Gerco CA, Kim B (2022a) Auxin biosynthesis maintains embryo identity and growth during BABY BOOM-induced somatic embryogenesis. Plant Physiol 188:1095–1110. https://doi.org/10.1093/plphys/kiab558
Comments (0)